OriDB Curated Paper

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Replication dynamics of the yeast genome.

M K Raghuraman, E A Winzeler, D Collingwood, S Hunt, L Wodicka, A Conway, D J Lockhart, R W Davis, B J Brewer, W L Fangman

Science (2001), 294(5540):115-21Data to DownloadPubMed | Science

Oligonucleotide microarrays were used to map the detailed topography of chromosome replication in the budding yeast Saccharomyces cerevisiae. The times of replication of thousands of sites across the genome were determined by hybridizing replicated and unreplicated DNAs, isolated at different times in S phase, to the microarrays. Origin activations take place continuously throughout S phase but with most firings near mid-S phase. Rates of replication fork movement vary greatly from region to region in the genome. The two ends of each of the 16 chromosomes are highly correlated in their times of replication. This microarray approach is readily applicable to other organisms, including humans.

OriDB annotation of this paper:

ARS assay

None curated.

2D gel

None curated.

ChIP of replication origin proteins

None curated.

Replication timing

ARS102.5, ARS103, ARS at I-10, ARS at I-17, ARS105, ARS106, ARS at I-102, ARS at I-102, ARS107, ARS108, ARS at I-166, ARS110, ARS202, ARS at II-81, ARS at II-72, ARS203, ARS at II-96, ARS at II-100, ARS at II-129, ARS207, ARS207.1, ARS207.5, ARS207.8, ARS at II-229, ARS at II-246, ARS211, ARS at II-366, ARS214, ARS215, ARS215.5, ARS216, ARS at II-479, ARS at II-504, ARS at II-499, ARS at II-549, ARS220, ARS at II-627, ARS221, ARS221.5, ARS at II-695, ARS222.5, ARS at II-732, ARS225, ARS227, ARS228, ARS229, ARS228.5, ARS305, ARS306, ARS at III-85, ARS307, ARS308, ARS309, ARS at III-146, ARS310, ARS at III-193, ARS313, ARS314, ARS314.5, ARS at III-200, ARS at III-224, ARS315, ARS316, ARS at III-308, ARS404, ARS at IV-51, ARS405, ARS at IV-96, ARS406, ARS at IV-170, ARS409, ARS at IV-220, ARS at IV-220, ARS409.5, ARS413, ARS414, ARS415, ARS415, ARS at IV-444, ARS416, ARS417, ARS417.5, ARS418, ARS at IV-611, ARS420, ARS422, ARS at IV-739, ARS422.5, ARS423, ARS at IV-791, ARS425, ARS at IV-820, ARS at IV-820, ARS at IV-859, ARS at IV-879, ARS428, ARS429, ARS at IV-975, ARS430, ARS at IV-1022, ARS431, ARS431.5, ARS432, ARS432.5, ARS at IV-1205, ARS433, ARS434, ARS at IV-1275, ARS435, ARS at IV-1306, ARS at IV-1308, ARS437, ARS at IV-1356, ARS at IV-1380, ARS439.5, ARS441, ARS at IV-1455, ARS442, ARS at IV-1469, ARS at IV-1471, ARS446, ARS at IV-1499, ARS at IV-1524, ARS507, ARS508, ARS510, ARS511, ARS512, ARS at V-256, ARS514.5, ARS at V-317, ARS516, ARS517, ARS518, ARS519, ARS at V-430, ARS520, ARS at V-510, ARS at V-510, ARS522, ARS at V-563, ARS523, ARS600.3, ARS600.4, ARS601, ARS602, ARS603, ARS at VI-62, ARS603.5, ARS604, ARS605, ARS606, ARS607, ARS at VI-236, ARS at VII-8, ARS700.5, ARS at VII-26, ARS at VII-26, ARS at VII-33, ARS702, ARS at VII-70, ARS704, ARS at VII-115, ARS706, ARS707, ARS at VII-167, ARS at VII-171, ARS710, ARS711, ARS at VII-270, ARS at VII-267, ARS714, ARS at VII-288, ARS at VII-338, ARS716, ARS717, ARS718, ARS719, ARS at VII-481, ARS at VII-540, ARS721, ARS at VII-553, ARS722, ARS at VII-576, ARS at VII-582, ARS726, ARS727, ARS728, ARS at VII-743, ARS729, ARS at VII-801, ARS731, ARS at VII-863, ARS731.5, ARS at VII-883, ARS733, ARS at VII-970, ARS733, ARS734, ARS735, ARS at VII-1005, ARS735.5, ARS804, ARS805, ARS at VIII-58, ARS at VIII-116, ARS805.7, ARS807, ARS at VIII-135, ARS809, ARS at VIII-193, ARS at VIII-198, ARS810, ARS at VIII-219, ARS at VIII-215, ARS813, ARS at VIII-261, ARS815, ARS at VIII-345, ARS816, ARS at VIII-367, ARS at VIII-381, ARS818, ARS818.5, ARS820, ARS at VIII-452, ARS822, ARS at VIII-505, ARS at VIII-551, ARS905, ARS at IX-31, ARS907, ARS908, ARS909, ARS912, ARS at IX-183, ARS at IX-205, ARS913, ARS at IX-220, ARS at IX-238, ARS at IX-280, ARS916, ARS at IX-314, ARS at IX-308, ARS920, ARS at IX-363, ARS922, ARS at IX-407, ARS1004, ARS1005, ARS1007, ARS1007.5, ARS at X-171, ARS1008, ARS at X-212, ARS1009, ARS1010, ARS at X-305, ARS1011, ARS1012, ARS1013, ARS1014, ARS1016, ARS1017, ARS at X-475, ARS1017.5, ARS1018, ARS1019, ARS1018.5, ARS1020, ARS1021, ARS1022, ARS at X-702, ARS at X-719, ARS1024, ARS1025, ARS at XI-1, ARS at XI-8, ARS at XI-24, ARS1103, ARS1104.5, ARS1105.5, ARS1106, ARS1106.7, ARS1107, ARS1107.5, ARS1109, ARS at XI-327, ARS1112, ARS1113, ARS1114, ARS1114.5, ARS1113.5, ARS1116, ARS at XI-520, ARS1117, ARS at XI-584, ARS1120, ARS at XI-617, ARS at XI-633, ARS1123, ARS at XII-12, ARS at XII-7, ARS at XII-31, ARS at XII-71, ARS1205, ARS1206, ARS1206.5, ARS at XII-140, ARS1208, ARS1209, ARS at XII-187, ARS1210, ARS1211, ARS1211.5, ARS at XII-282, ARS1212, ARS at XII-296, ARS1213, ARS1215, ARS at XII-434, ARS1217, ARS at XII-599, ARS at XII-599, ARS1218, ARS at XII-607, ARS at XII-618, ARS at XII-638, ARS1219.7, ARS1220, ARS1223, ARS at XII-749, ARS1226, ARS at XII-786, ARS1227, ARS at XII-856, ARS at XII-873, ARS1227.5, ARS at XII-931, ARS at XII-977, ARS1232, ARS1233, ARS1233, ARS at XII-1020, ARS1234, ARS at XII-1043, ARS at XII-1056, ARS1235, ARS at XII-1056, ARS1303, ARS1304, ARS at XIII-45, ARS at XIII-58, ARS1305, ARS at XIII-112, ARS1307, ARS1307.5, ARS1308, ARS at XIII-227, ARS1309, ARS at XIII-269, ARS1310, ARS at XIII-290, ARS at XIII-313, ARS1312, ARS at XIII-373, ARS1315, ARS1316, ARS at XIII-478, ARS1319, ARS1320, ARS1323, ARS1325, ARS at XIII-727, ARS1327, ARS at XIII-763, ARS at XIII-786, ARS1330, ARS1331.7, ARS1332, ARS at XIV-36, ARS1407, ARS at XIV-85, ARS1410, ARS at XIV-116, ARS1410, ARS at XIV-137, ARS at XIV-159, ARS at XIV-180, ARS1412, ARS1413, ARS at XIV-253, ARS1414, ARS1415, ARS at XIV-325, ARS1311.7, ARS at XIV-344, ARS at XIV-358, ARS at XIV-359, ARS1417, ARS at XIV-416, ARS at XIV-459, ARS at XIV-516, ARS1422, ARS at XIV-568, ARS at XIV-556, ARS1424, ARS at XIV-617, ARS at XIV-656, ARS1427, ARS at XIV-731, ARS at XIV-734, ARS1429, ARS at XIV-773, ARS at XV-45, ARS1508, ARS at XV-79, ARS1509, ARS at XV-104, ARS1510, ARS1510.5, ARS at XV-245, ARS1511, ARS1512, ARS1513, ARS at XV-332, ARS1513.5, ARS at XV-445, ARS at XV-464, ARS1514, ARS at XV-495, ARS1515.5, ARS1515.7, ARS at XV-515, ARS1516, ARS1517, ARS at XV-605, ARS1519, ARS at XV-646, ARS1519, ARS at XV-663, ARS at XV-670, ARS at XV-705, ARS at XV-737, ARS1523, ARS1525, ARS at XV-848, ARS1526, ARS at XV-902, ARS1528, ARS at XV-900, ARS at XV-946, ARS1529, ARS at XV-1012, ARS1529.5, ARS at XV-1058, ARS1601, ARS1602, ARS at XVI-19, ARS1604, ARS at XVI-57, ARS1605, ARS at XVI-91, ARS1607, ARS at XVI-163, ARS at XVI-179, ARS at XVI-191, ARS at XVI-196, ARS1609, ARS at XVI-215, ARS at XVI-262, ARS at XVI-251, ARS1614, ARS1617, ARS at XVI-324, ARS1618, ARS at XVI-377, ARS1619, ARS at XVI-423, ARS1618.5, ARS at XVI-440, ARS1620.5, ARS at XVI-454, ARS at XVI-489, ARS1621, ARS at XVI-553, ARS at XVI-560, ARS1622, ARS1622.5, ARS1622.7, ARS1623, ARS1624, ARS at XVI-691, ARS1625, ARS1626.5, ARS1627, ARS at XVI-824, ARS1628, ARS at XVI-873, ARS at XVI-910, ARS1631, ARS at XVI-942, ARS at XVI-930

Replication in hydroxyurea

None curated.

Predicted origins

None curated.

Confirmed sequence element

None curated.

Predicted sequence element

None curated.

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