OriDB - ARS at IX-407

Origin
Summary
Information
Origin
Summary
Graphics
Origin
Location
Assignments
Origin
Sequence
Elements
Phylogenetic
Sequence
Conservation
0
User
Note(s)
References
for this
Origin

Status: Likely ARS: Identified by 8 genome-wide studies.

Genomic Location: Chr9:405633-407617
Probably within tandem intergenic space between YIR026C and YIR027C.
• View at UCSC genome browser
• View on SGD Chromosome Features Map
• View at SGD gbrowser site
• View at Ensembl browser

DNA Sequence:

Origin Sequence Elements: No elements have been reported for this origin.

Helical Stability: Minimum -166.0 ΔG° (kcal/mol) at location 407173.

Time of Origin Replication (Trep): Raghuraman et al. (2001) — Trep: 20.4 min.
Yabuki et al. (2002) — Trep: 20.9 min.
Alvino et al. (2007) — Peak first observed at 10.0 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at IX-407 has unique ID: 707

Loading - Please wait...

ARS at IX-407 has unique ID: 707

Studies that cloned this origin

None curated.

Studies that analyzed this origin by 2D gel

None curated.

Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Xu et al. (2006): Chr9:405635-407615

Shor et al. (2009): Chr9:406200-407500 (orc2-1/wt peak ratio: 0.24)

MÃ¼ller et al. (2010): Chr9:406175-406775 (orc1-bah-delta/wt peak ratio: 0.21)

Studies that measured the replication time of this origin

Raghuraman et al. (2001): Chr9:411264 (Trep: 20.4 min.) (Confidence: 9)

Yabuki et al. (2002): Chr9:411591 (Trep: 20.9 min.)

Alvino et al. (2007): Chr9:412670 (Peak first observed at 10.0 min.)

Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr9:411333 (Activity detected in: wild-type, rad53)

CrabbÃ© et al. (2010): Chr9:406042-406542 (Activity detected in: wild-type, rad9, rev3 rad30, eco1, ctf4, ddc1, rad24, pol2-12, elg1, tof1, mrc1-AQ, mrc1-AQ rad9, ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)