ARS1017

Status: Confirmed ARS: Confirmed by ARS assay and identified by 6 genome-wide studies.

Genomic Location: Chr10:459029-459588
Within divergent intergenic space between YJR011C and YJR013W.
• View at UCSC genome browser
• View on SGD Chromosome Features Map
• View at SGD gbrowser site
• View at Ensembl browser

DNA Sequence: View sequence

Origin Sequence Elements: No elements have been reported for this origin.

Helical Stability: Minimum -145.4 ΔG° (kcal/mol) at location 459279.

Time of Origin Replication (Trep): Raghuraman et al. (2001) — Trep: 25.2 min.
Alvino et al. (2007) — Peak first observed at 12.5 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at X-459 has unique ID: 348

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ARS at X-459 has unique ID: 348

Studies that cloned this origin

Wyrick et al. (2001): Chr10:459029-459588

Studies that analyzed this origin by 2D gel

None curated.

Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Xu et al. (2006): Chr10:459015-460145

Szilard et al. (2010): Chr10:459405-459415

Studies that measured the replication time of this origin

Raghuraman et al. (2001): Chr10:451760 (Trep: 25.2 min.) (Confidence: 4)

Alvino et al. (2007): Chr10:453800 (Peak first observed at 12.5 min.)

Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr10:457000 (Activity detected in: rad53)

Crabbé et al. (2010): Chr10:459029-459588 (Activity detected in: wild-type, rad9, rev3 rad30, eco1, ctf4, ddc1, rad24, pol2-12, elg1, tof1, mrc1-AQ, mrc1-AQ rad9, ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)

Studies that predicted the location of this origin

This origin has not been predicted by any curated study.

ARS at X-459 has unique ID: 348

Studies that confirmed an essential ACS element

None curated.

Studies that predicted an essential ACS element

None curated.

ACS LOGO:

ARS at X-459 has unique ID: 348

Alignments from the UCSC genome browser

ARS at X-459 has unique ID: 348

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at X-459 has unique ID: 348

Genome-wide studies that identified this origin

Raghuraman et al. (2001): PubMed | Science

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Alvino et al. (2007): PubMed | PubMed Central | Mol. Cell. Biol.

Szilard et al. (2010): PubMed | PubMed Central | Nat. Struct. Mol. Biol.

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.

Studies that cloned this origin

Wyrick et al. (2001): PubMed | Science

Studies that analyzed this origin by 2D gel

None identified.

Studies that confirmed an essential ACS element

None identified.

Studies that predicted an essential ACS element

None identified.

ARS at X-459 has unique ID: 348