OriDB - ARS228

Status: Confirmed ARS: Confirmed by ARS assay and identified by 9 genome-wide studies.

Genomic Location: Chr2:792116-792340
Within tandem intergenic space between YBR294W and YBR295W.
• View at UCSC genome browser
• View on SGD Chromosome Features Map
• View at SGD gbrowser site
• View at Ensembl browser

DNA Sequence:

Origin Sequence Elements: ACS predicted.

Helical Stability: Minimum -138.1 ΔG° (kcal/mol) at location 792116.

Time of Origin Replication (Trep): Raghuraman et al. (2001) — Trep: 37.0 min.
Alvino et al. (2007) — Peak first observed at 12.5 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at II-792 has unique ID: 61

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ARS at II-792 has unique ID: 61

Studies that cloned this origin

Nieduszynski et al. (2006): Chr2:792116-792340

Studies that analyzed this origin by 2D gel

None curated.

Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Wyrick et al. (2001): Chr2:791769-792803

Xu et al. (2006): Chr2:790315-792585

Shor et al. (2009): Chr2:791800-792800 (orc2-1/wt peak ratio: 0.35)

Szilard et al. (2010): Chr2:792085-792095

Müller et al. (2010): Chr2:791600-792725 (orc1-bah-delta/wt peak ratio: 0.72)

Studies that measured the replication time of this origin

Raghuraman et al. (2001): Chr2:799073 (Trep: 37.0 min.) (Confidence: 5)

Alvino et al. (2007): Chr2:791500 (Peak first observed at 12.5 min.)

Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr2:792000 (Activity detected in: rad53)

Crabbé et al. (2010): Chr2:792116-792340 (Activity detected in: ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)

Studies that predicted the location of this origin

This origin has not been predicted by any curated study.

ARS at II-792 has unique ID: 61

Studies that confirmed an essential ACS element

None curated.

Studies that predicted an essential ACS element

Nieduszynski et al. (2006):

A

G

A

T

A

T

G

T

G

T

ACS LOGO:

ARS at II-792 has unique ID: 61

Alignments from the UCSC genome browser

Predicted ACS

S. cerevisiae

C

T

G

T

C

T

C

T

C

T

A

T

G

T

G

A

G

A

T

A

T

G

T

G

T

A

T

G

A

T

C

T

G

A

G

A

S. kudriavzevii

A

G

C

A

T

C

A

T

C

T

A

C

A

T

A

G

T

G

A

T

G

T

G

C

T

C

T

-

T

C

G

A

G

A

G

T

S. mikatae

-

C

A

C

A

T

G

A

G

T

A

T

A

T

G

C

A

T

G

T

-

T

G

A

T

G

A

G

A

C

A

G

S. paradoxus

C

T

C

A

T

G

T

A

-

C

A

T

A

T

G

C

A

G

A

T

A

C

G

C

T

G

T

G

T

C

A

T

G

A

T

G

A

G

A

C

T

A

-

C

:

*

:

*

:

*

:

*

:

*

:

*

ARS at II-792 has unique ID: 61

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at II-792 has unique ID: 61

Genome-wide studies that identified this origin

Raghuraman et al. (2001): PubMed | Science

Wyrick et al. (2001): PubMed | Science

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Alvino et al. (2007): PubMed | PubMed Central | Mol. Cell. Biol.

Shor et al. (2009): PubMed | PubMed Central | PLoS Genet.

Szilard et al. (2010): PubMed | PubMed Central | Nat. Struct. Mol. Biol.

Müller et al. (2010): PubMed | PubMed Central | Genes Dev.

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.

Studies that cloned this origin

Nieduszynski et al. (2006): PubMed | PubMed Central | Genes Dev.

Studies that analyzed this origin by 2D gel

None identified.

Studies that confirmed an essential ACS element

None identified.

Studies that predicted an essential ACS element

Nieduszynski et al. (2006): PubMed | PubMed Central | Genes Dev.

ARS at II-792 has unique ID: 61

Confirmed ARS at II-792

ARS228

Other names: proARS228

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Studies that cloned this origin

Studies that analyzed this origin by 2D gel

Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Studies that measured the replication time of this origin

Studies that measured the activity of this origin in hydroxyurea (HU)

Studies that predicted the location of this origin

Studies that confirmed an essential ACS element

Studies that predicted an essential ACS element

Alignments from the UCSC genome browser

Genome-wide studies that identified this origin

Studies that cloned this origin

Studies that analyzed this origin by 2D gel

Studies that confirmed an essential ACS element

Studies that predicted an essential ACS element