ARS1009

Status: Confirmed ARS: Confirmed by ARS assay and identified by 10 genome-wide studies.

Genomic Location: Chr10:228248-228740
Within tandem intergenic space between SNR37 and YJL103C.
• View at UCSC genome browser
• View on SGD Chromosome Features Map
• View at SGD gbrowser site
• View at Ensembl browser

DNA Sequence: View sequence

Origin Sequence Elements: ACS confirmed.

Helical Stability: Minimum -142.3 ΔG° (kcal/mol) at location 228728.

Time of Origin Replication (Trep): Raghuraman et al. (2001) — Trep: 25.6 min.
Yabuki et al. (2002) — Trep: 20.8 min.
Alvino et al. (2007) — Peak first observed at 12.5 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at X-228 has unique ID: 338

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ARS at X-228 has unique ID: 338

Studies that cloned this origin

Wyrick et al. (2001): Chr10:228248-228740

Studies that analyzed this origin by 2D gel

None curated.

Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Wyrick et al. (2001): Chr10:228297-228722

Xu et al. (2006): Chr10:227635-229405

Shor et al. (2009): Chr10:227900-229400 (orc2-1/wt peak ratio: 0.64)

Szilard et al. (2010): Chr10:228595-228605

Müller et al. (2010): Chr10:228425-229475 (orc1-bah-delta/wt peak ratio: 0.63)

Studies that measured the replication time of this origin

Raghuraman et al. (2001): Chr10:231255 (Trep: 25.6 min.) (Confidence: 9)

Yabuki et al. (2002): Chr10:225933 (Trep: 20.8 min.)

Alvino et al. (2007): Chr10:227780 (Peak first observed at 12.5 min.)

Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr10:227750 (Activity detected in: wild-type, rad53)

Crabbé et al. (2010): Chr10:228248-228740 (Activity detected in: wild-type, rad9, rev3 rad30, ctf4, ddc1, rad24, pol2-12, elg1, tof1, mrc1-AQ, mrc1-AQ rad9, ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)

Studies that predicted the location of this origin

This origin has not been predicted by any curated study.

ARS at X-228 has unique ID: 338

Studies that confirmed an essential ACS element

Studies that predicted an essential ACS element

Eaton et al. (2010):

A

A

T

A

T

T

T

A

T

A

T

T

T

A

T

G

T

A

C

A

G

T

T

T

T

A

C

A

T

T

G

T

A

ACS LOGO:

ARS at X-228 has unique ID: 338

Alignments from the UCSC genome browser

ARS at X-228 has unique ID: 338

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at X-228 has unique ID: 338

Genome-wide studies that identified this origin

Raghuraman et al. (2001): PubMed | Science

Wyrick et al. (2001): PubMed | Science

Yabuki et al. (2002): PubMed

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Alvino et al. (2007): PubMed | PubMed Central | Mol. Cell. Biol.

Shor et al. (2009): PubMed | PubMed Central | PLoS Genet.

Szilard et al. (2010): PubMed | PubMed Central | Nat. Struct. Mol. Biol.

Müller et al. (2010): PubMed | PubMed Central | Genes Dev.

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.

Studies that cloned this origin

Wyrick et al. (2001): PubMed | Science

Studies that analyzed this origin by 2D gel

None identified.

Studies that confirmed an essential ACS element

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Studies that predicted an essential ACS element

Eaton et al. (2010): PubMed | PubMed Central | Genes Dev.

ARS at X-228 has unique ID: 338