ARS110

Status: Confirmed ARS: Confirmed by ARS assay and identified by 8 genome-wide studies.

Genomic Location: Chr1:176154-176402
Within tandem intergenic space between YAR019C and YAR020C.
• View at UCSC genome browser
• View on SGD Chromosome Features Map
• View at SGD gbrowser site
• View at Ensembl browser

DNA Sequence: View sequence

Origin Sequence Elements: ACS predicted.

Helical Stability: Minimum -145.5 ΔG° (kcal/mol) at location 176344.

Time of Origin Replication (Trep): Raghuraman et al. (2001) — Trep: 14.6 min.
Yabuki et al. (2002) — Trep: 21.9 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at I-176 has unique ID: 14

DetailedDefaultZoomed Out

Loading - Please wait...

ARS at I-176 has unique ID: 14

Studies that cloned this origin

Nieduszynski et al. (2006): Chr1:176154-176402

Studies that analyzed this origin by 2D gel

None curated.

Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Xu et al. (2006): Chr1:175460-177260

Shor et al. (2009): Chr1:176000-177100 (orc2-1/wt peak ratio: 0.29)

Szilard et al. (2010): Chr1:176465-176475

Müller et al. (2010): Chr1:176000-176675 (orc1-bah-delta/wt peak ratio: 0.61)

Studies that measured the replication time of this origin

Raghuraman et al. (2001): Chr1:172869 (Trep: 14.6 min.) (Confidence: 9)

Yabuki et al. (2002): Chr1:176769 (Trep: 21.9 min.)

Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr1:180000 (Activity detected in: wild-type, rad53)

Crabbé et al. (2010): Chr1:176154-176402 (Activity detected in: wild-type, rad9, rev3 rad30, eco1, ctf4, ddc1, rad24, pol2-12, elg1, tof1, mrc1-AQ, mrc1-AQ rad9, ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)

Studies that predicted the location of this origin

This origin has not been predicted by any curated study.

ARS at I-176 has unique ID: 14

Studies that confirmed an essential ACS element

None curated.

Studies that predicted an essential ACS element

Nieduszynski et al. (2006):

T

C

T

T

T

T

T

A

T

G

T

T

T

T

C

T

Xu et al. (2006):

T

C

T

T

T

T

T

A

T

G

T

T

T

T

C

T

T

A

T

G

A

T

T

G

A

A

T

T

A

T

T

T

A

T

ACS LOGO:

ARS at I-176 has unique ID: 14

Alignments from the UCSC genome browser

ARS at I-176 has unique ID: 14

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at I-176 has unique ID: 14

Genome-wide studies that identified this origin

Raghuraman et al. (2001): PubMed | Science

Yabuki et al. (2002): PubMed

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Shor et al. (2009): PubMed | PubMed Central | PLoS Genet.

Szilard et al. (2010): PubMed | PubMed Central | Nat. Struct. Mol. Biol.

Müller et al. (2010): PubMed | PubMed Central | Genes Dev.

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.

Studies that cloned this origin

Nieduszynski et al. (2006): PubMed | PubMed Central | Genes Dev.

Studies that analyzed this origin by 2D gel

None identified.

Studies that confirmed an essential ACS element

None identified.

Studies that predicted an essential ACS element

Nieduszynski et al. (2006): PubMed | PubMed Central | Genes Dev.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

ARS at I-176 has unique ID: 14