Confirmed ARS at I-124

ARS107

Other names: proARS107

Status: Confirmed ARS: Confirmed by ARS assay and identified by 9 genome-wide studies.

Genomic Location: Chr1:124350-124599
Within divergent intergenic space between YAL016C-B and YAL016W.
View at UCSC genome browser
View on SGD Chromosome Features Map
View at SGD gbrowser site
View at Ensembl browser

DNA Sequence:

Origin Sequence Elements: ACS predicted.

Helical Stability: Minimum -135.4 ΔG° (kcal/mol) at location 124590.

Time of Origin Replication (Trep): Raghuraman et al. (2001) — Trep: 29.9 min.
Yabuki et al. (2002) — Trep: 28.1 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at I-124 has unique ID: 9

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ARS at I-124 has unique ID: 9

Studies that cloned this origin

Nieduszynski et al. (2006): Chr1:124350-124599


Studies that analyzed this origin by 2D gel

None curated.


Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Wyrick et al. (2001): Chr1:124299-124883

Xu et al. (2006): Chr1:123305-125545

Shor et al. (2009): Chr1:123000-125700 (orc2-1/wt peak ratio: 0.74)

Szilard et al. (2010): Chr1:124515-124525

Müller et al. (2010): Chr1:123800-125300 (orc1-bah-delta/wt peak ratio: 0.60)


Studies that measured the replication time of this origin

Raghuraman et al. (2001): Chr1:121834 (Trep: 29.9 min.) (Confidence: 2)

Yabuki et al. (2002): Chr1:125269 (Trep: 28.1 min.)


Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr1:124000 (Activity detected in: rad53)

Crabbé et al. (2010): Chr1:124350-124599 (Activity detected in: wild-type, rad9, rev3 rad30, eco1, ctf4, ddc1, rad24, pol2-12, elg1, tof1, mrc1-AQ, mrc1-AQ rad9, ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)


Studies that predicted the location of this origin

This origin has not been predicted by any curated study.



ARS at I-124 has unique ID: 9

Studies that confirmed an essential ACS element

None curated.


Studies that predicted an essential ACS element

  Nieduszynski et al. (2006):       ATATTTAAGTCTTGAT                   
  Eaton et al. (2010):      ATTTTTTATATTTAAGTCTTGATTAACTGCTTT   
ACS LOGO:   ACS_logo  

ARS at I-124 has unique ID: 9

Alignments from the UCSC genome browser

Predicted ACS
S. cerevisiaeTCTAAATATGTAAATTTTTTATATTTAAGTCTTGATTAACTGCTTTGGATGCTGTA
S. mikataeGCTATACTTGTAATTTTTTTATGTTTAAGTGTTAATAATTTGTTTTGGTTGCATTG
S. paradoxusATTGAATATGTA--GTTTTTATATTTAAGTCTTAATTGGCTGCTTTAG-TGTCATA
S. bayanusTATATATTCGTAATATTTTTATATTTAAGTCTTGATTAGCCGCTTGGC--------
*:*::***:*******:*******:****::::*:**::::::

ARS at I-124 has unique ID: 9

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at I-124 has unique ID: 9

Genome-wide studies that identified this origin

Raghuraman et al. (2001): PubMed | Science

Wyrick et al. (2001): PubMed | Science

Yabuki et al. (2002): PubMed

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Shor et al. (2009): PubMed | PubMed Central | PLoS Genet.

Szilard et al. (2010): PubMed | PubMed Central | Nat. Struct. Mol. Biol.

Müller et al. (2010): PubMed | PubMed Central | Genes Dev.

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.


Studies that cloned this origin

Nieduszynski et al. (2006): PubMed | PubMed Central | Genes Dev.


Studies that analyzed this origin by 2D gel

None identified.


Studies that confirmed an essential ACS element

None identified.


Studies that predicted an essential ACS element

Nieduszynski et al. (2006): PubMed | PubMed Central | Genes Dev.

Eaton et al. (2010): PubMed | PubMed Central | Genes Dev.


ARS at I-124 has unique ID: 9