Confirmed ARS at XVI-332

ARS1617

Other names: proARS1617

Status: Confirmed ARS: Confirmed by ARS assay and identified by 6 genome-wide studies.

Genomic Location: Chr16:331678-332074
Within convergent intergenic space between YPL116W and YPL115C.
View at UCSC genome browser
View on SGD Chromosome Features Map
View at SGD gbrowser site
View at Ensembl browser

DNA Sequence:

Origin Sequence Elements: ACS predicted.

Helical Stability: Minimum -141.3 ΔG° (kcal/mol) at location 332008.

Time of Origin Replication (Trep): Raghuraman et al. (2001) — Trep: 25.2 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at XVI-332 has unique ID: 609

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ARS at XVI-332 has unique ID: 609

Studies that cloned this origin

Müller & Nieduszynski (2012): Chr16:331678-332074


Studies that analyzed this origin by 2D gel

None curated.


Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Wyrick et al. (2001): Chr16:331698-332099

Xu et al. (2006): Chr16:331045-332605

Szilard et al. (2010): Chr16:331755-331765


Studies that measured the replication time of this origin

Raghuraman et al. (2001): Chr16:325913 (Trep: 25.2 min.) (Confidence: 9)


Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr16:332000 (Activity detected in: rad53)

Crabbé et al. (2010): Chr16:331043-332607 (Activity detected in: mrc1-AQ, mrc1-AQ rad9, ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)


Studies that predicted the location of this origin

This origin has not been predicted by any curated study.



ARS at XVI-332 has unique ID: 609

Studies that confirmed an essential ACS element

None curated.


Studies that predicted an essential ACS element

  Xu et al. (2006):      CTTTTTTGTATTTAGTAACACAATTTTTCTATTT  
ACS LOGO:   ACS_logo  

ARS at XVI-332 has unique ID: 609

Alignments from the UCSC genome browser

No phylogenetic sequence conservation data.

ARS at XVI-332 has unique ID: 609

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at XVI-332 has unique ID: 609

Genome-wide studies that identified this origin

Raghuraman et al. (2001): PubMed | Science

Wyrick et al. (2001): PubMed | Science

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Szilard et al. (2010): PubMed | PubMed Central | Nat. Struct. Mol. Biol.

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.


Studies that cloned this origin

Müller & Nieduszynski (2012): PubMed | Genome Res.


Studies that analyzed this origin by 2D gel

None identified.


Studies that confirmed an essential ACS element

None identified.


Studies that predicted an essential ACS element

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics


ARS at XVI-332 has unique ID: 609