OriDB Curated Paper

Please contact OriDB if you think this paper has been mis-annotated.

Genome-wide identification of replication origins in yeast by comparative genomics.

Conrad A Nieduszynski, Yvonne Knox, Anne D Donaldson

Genes Dev. (2006), 20(14):1874-9Data to DownloadPubMed | PubMed Central | Genes Dev.

We discovered that sequences essential for replication origin function are frequently conserved in sensu stricto Saccharomyces species. Here we use analysis of phylogenetic conservation to identify replication origin sequences throughout the Saccharomyces cerevisiae genome at base pair resolution. Origin activity was confirmed for each of 228 predicted sites--representing 86% of apparent origin regions. This is the first study to determine the genome-wide location of replication origins at a resolution sufficient to identify the sequence elements bound by replication proteins. Our results demonstrate that phylogenetic conservation can be used to identify the origin sequences responsible for replicating a eukaryotic genome.

OriDB annotation of this paper:

ARS assay

ARS104, ARS106, ARS107, ARS109, ARS110, ARS201.5, ARS202, ARS207, ARS207.5, ARS208, ARS209, ARS211, ARS214, ARS215, ARS216, ARS220, ARS222, ARS224, ARS225, ARS228, ARS313, ARS314, ARS315, ARS316, ARS317, ARS403, ARS405, ARS406, ARS409, ARS410, ARS413, ARS414, ARS417, ARS417.5, ARS418, ARS419, ARS421, ARS422, ARS422.5, ARS423, ARS425, ARS428, ARS429, ARS430, ARS431, ARS431.5, ARS432, ARS432.5, ARS433, ARS434, ARS435, ARS440, ARS442, ARS446, ARS507, ARS508, ARS510, ARS511, ARS512, ARS514, ARS516, ARS517, ARS518, ARS522, ARS702, ARS704, ARS707, ARS710, ARS714, ARS716, ARS717, ARS718, ARS719, ARS720, ARS721, ARS722, ARS727, ARS728, ARS729, ARS731, ARS731.5, ARS733, ARS734, ARS802, ARS805, ARS807, ARS809, ARS813, ARS818, ARS820, ARS822, ARS909, ARS911, ARS913, ARS913.5, ARS914, ARS919, ARS920, ARS922, ARS1011, ARS1012, ARS1014, ARS1018, ARS1020, ARS1021, ARS1022, ARS1024, ARS1103, ARS1104.5, ARS1106, ARS1106.3, ARS1106.7, ARS1109, ARS1112, ARS1113, ARS1114, ARS1116, ARS1118, ARS1120, ARS1123, ARS1206, ARS1209, ARS1211, ARS1212, ARS1213, ARS1215, ARS1216, ARS1216.5, ARS1217, ARS1218, ARS1220, ARS1223, ARS1226, ARS1227.5, ARS1232, ARS1233, ARS1234, ARS1303, ARS1305, ARS1307, ARS1308, ARS1309, ARS1310, ARS1312, ARS1316, ARS1320, ARS1323, ARS1324, ARS1325, ARS1327, ARS1328, ARS1329, ARS1330, ARS1332, ARS1405, ARS1406, ARS1407, ARS1411, ARS1412, ARS1413, ARS1414, ARS1415, ARS1417, ARS1419, ARS1420, ARS1421, ARS1422, ARS1424, ARS1426, ARS1427, ARS1506.5, ARS1507, ARS1508, ARS1509, ARS1510, ARS1511, ARS1513, ARS1513.5, ARS1516, ARS1519, ARS1521, ARS1523, ARS1524, ARS1526, ARS1528, ARS1529, ARS1604, ARS1605, ARS1607, ARS1614, ARS1618, ARS1619, ARS1620.5, ARS1621, ARS1622, ARS1622.5, ARS1623, ARS1624, ARS1625, ARS1626, ARS1626.5, ARS1627, ARS1628, ARS1630, ARS1631

2D gel

None curated.

ChIP of replication origin proteins

None curated.

Replication timing

None curated.

Replication in hydroxyurea

None curated.

Predicted origins

None curated.

Confirmed sequence element

ARS1216.5, ARS1021, ARS733, ARS731.5, ARS731, ARS729, ARS728, ARS727, ARS721, ARS719, ARS718, ARS717, ARS714, ARS710, ARS707, ARS704, ARS702, ARS432.5, ARS432, ARS1526, ARS1529.5, ARS1626.5

Predicted sequence element

ARS104, ARS106, ARS107, ARS109, ARS110, ARS201.5, ARS202, ARS207, ARS207.5, ARS208, ARS211, ARS214, ARS215, ARS216, ARS220, ARS222, ARS224, ARS225, ARS228, ARS310, ARS313, ARS314, ARS315, ARS316, ARS317, ARS319, ARS403, ARS405, ARS406, ARS409, ARS410, ARS413, ARS414, ARS417, ARS417.5, ARS418, ARS419, ARS421, ARS422, ARS422.5, ARS423, ARS425, ARS428, ARS429, ARS430, ARS431, ARS431.5, ARS433, ARS434, ARS435, ARS440, ARS442, ARS446, ARS507, ARS508, ARS510, ARS511, ARS512, ARS514, ARS516, ARS517, ARS518, ARS522, ARS716, ARS720, ARS722, ARS734, ARS802, ARS805, ARS807, ARS809, ARS813, ARS818, ARS820, ARS822, ARS824, ARS909, ARS911, ARS912, ARS913, ARS913.5, ARS914, ARS919, ARS920, ARS922, ARS1002, ARS1005, ARS1006, ARS1010, ARS1011, ARS1012, ARS1013, ARS1014, ARS1018, ARS1019, ARS1020, ARS1022, ARS1023, ARS1024, ARS1025, ARS1103, ARS1104.5, ARS1106, ARS1106.3, ARS1106.7, ARS1109, ARS1112, ARS1113, ARS1114, ARS1116, ARS1118, ARS1120, ARS1123, ARS1206, ARS1209, ARS1211, ARS1212, ARS1213, ARS1215, ARS1216, ARS1217, ARS1218, ARS1220, ARS1223, ARS1226, ARS1227.5, ARS1232, ARS1233, ARS1234, ARS1303, ARS1305, ARS1307, ARS1308, ARS1309, ARS1310, ARS1312, ARS1316, ARS1320, ARS1323, ARS1324, ARS1325, ARS1327, ARS1328, ARS1329, ARS1330, ARS1332, ARS1405, ARS1406, ARS1407, ARS1411, ARS1412, ARS1413, ARS1414, ARS1415, ARS1417, ARS1419, ARS1420, ARS1421, ARS1422, ARS1424, ARS1426, ARS1427, ARS1506.5, ARS1507, ARS1508, ARS1509, ARS1510, ARS1511, ARS1513, ARS1513.5, ARS1514, ARS1516, ARS1519, ARS1521, ARS1523, ARS1524, ARS1528, ARS1529, ARS1604, ARS1605, ARS1607, ARS1614, ARS1618, ARS1619, ARS1620.5, ARS1621, ARS1622, ARS1622.5, ARS1623, ARS1624, ARS1625, ARS1626, ARS1627, ARS1628, ARS1630, ARS1631

The data on this page come directly from PubMed and OriDB databases, please report any errors to OriDB.
This page is new! Please let us know of any problems you experience.