Confirmed ARS at XVI-777

ARS1626.5

Other names: ARS1635

Status: Confirmed ARS: Confirmed by ARS assay and identified by 9 genome-wide studies.

Genomic Location: Chr16:776921-777152
Within divergent intergenic space between TC(GCA)P2 and YPR121W.
View at UCSC genome browser
View on SGD Chromosome Features Map
View at SGD gbrowser site
View at Ensembl browser

DNA Sequence:

Origin Sequence Elements: ACS confirmed.

Helical Stability: Minimum -145.0 ΔG° (kcal/mol) at location 776921.

Time of Origin Replication (Trep): Raghuraman et al. (2001) — Trep: 15.9 min.
Yabuki et al. (2002) — Trep: 22.0 min.
Alvino et al. (2007) — Peak first observed at 10.0 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at XVI-777 has unique ID: 630

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ARS at XVI-777 has unique ID: 630

Studies that cloned this origin

Nieduszynski et al. (2006): Chr16:776921-777152


Studies that analyzed this origin by 2D gel

None curated.


Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Xu et al. (2006): Chr16:775385-779275

Shor et al. (2009): Chr16:776500-777800 (orc2-1/wt peak ratio: 0.57)

Szilard et al. (2010): Chr16:777005-777015

Müller et al. (2010): Chr16:776150-777875 (orc1-bah-delta/wt peak ratio: 0.64)


Studies that measured the replication time of this origin

Raghuraman et al. (2001): Chr16:772637 (Trep: 15.9 min.) (Confidence: 9)

Yabuki et al. (2002): Chr16:777383 (Trep: 22.0 min.)

Alvino et al. (2007): Chr16:778110 (Peak first observed at 10.0 min.)


Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr16:778750 (Activity detected in: wild-type, rad53)

Crabbé et al. (2010): Chr16:776921-777152 (Activity detected in: wild-type, rad9, rev3 rad30, eco1, ctf4, ddc1, rad24, pol2-12, elg1, tof1, mrc1-AQ, mrc1-AQ rad9, ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)


Studies that predicted the location of this origin

This origin has not been predicted by any curated study.



ARS at XVI-777 has unique ID: 630

Studies that confirmed an essential ACS element

  Nieduszynski et al. (2006):        TTATTTATATTTTGG                   

Studies that predicted an essential ACS element

  Xu et al. (2006):      TATTTATTTATATTTTGGCATTACTCTTCATCAT  
  Eaton et al. (2010):      TTTATTTATATTTTGGCATTACTCTTCATCATT   
ACS LOGO:   ACS_logo  

ARS at XVI-777 has unique ID: 630

Alignments from the UCSC genome browser

Confirmed ACS
S. cerevisiaeTGATTTTCATATTTATTTATTTATTTATATTTTGGCATTACTCTTCATCATTTTT
S. kudriavzeviiAAAATTATATATTCG-TTATTTATTAGGGCCAATTTG-------CTAC----TTT
S. mikataeTGATTTCCATATCCATTTATTTATTTGTATTTTAATG-------TCGCCATTTTC
S. paradoxusTGTTTTTTATATTTAATTATTTATTTGGGCTTAATTG-------TTGCCGTTCTT
::::******::*********::::::::*:

ARS at XVI-777 has unique ID: 630

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at XVI-777 has unique ID: 630

Genome-wide studies that identified this origin

Raghuraman et al. (2001): PubMed | Science

Yabuki et al. (2002): PubMed

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Alvino et al. (2007): PubMed | PubMed Central | Mol. Cell. Biol.

Shor et al. (2009): PubMed | PubMed Central | PLoS Genet.

Szilard et al. (2010): PubMed | PubMed Central | Nat. Struct. Mol. Biol.

Müller et al. (2010): PubMed | PubMed Central | Genes Dev.

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.


Studies that cloned this origin

Nieduszynski et al. (2006): PubMed | PubMed Central | Genes Dev.


Studies that analyzed this origin by 2D gel

None identified.


Studies that confirmed an essential ACS element

Nieduszynski et al. (2006): PubMed | PubMed Central | Genes Dev.


Studies that predicted an essential ACS element

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Eaton et al. (2010): PubMed | PubMed Central | Genes Dev.


ARS at XVI-777 has unique ID: 630