OriDB - ARS1018

Status: Confirmed ARS: Confirmed by ARS assay and identified by 10 genome-wide studies.

Genomic Location: Chr10:540239-540474
Within tandem intergenic space between YJR055W and TD(GUC)J4.
• View at UCSC genome browser
• View on SGD Chromosome Features Map
• View at SGD gbrowser site
• View at Ensembl browser

DNA Sequence:

Origin Sequence Elements: ACS confirmed.

Helical Stability: Minimum -145.7 ΔG° (kcal/mol) at location 540389.

Time of Origin Replication (Trep): Raghuraman et al. (2001) — Trep: 17.3 min.
Yabuki et al. (2002) — Trep: 21.1 min.
Alvino et al. (2007) — Peak first observed at 10.0 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at X-540 has unique ID: 351

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ARS at X-540 has unique ID: 351

Studies that cloned this origin

Nieduszynski et al. (2006): Chr10:540239-540474

Studies that analyzed this origin by 2D gel

None curated.

Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Wyrick et al. (2001): Chr10:538954-540454

Xu et al. (2006): Chr10:539670-541745

Shor et al. (2009): Chr10:539800-541000 (orc2-1/wt peak ratio: 0.55)

Szilard et al. (2010): Chr10:540415-540425

Müller et al. (2010): Chr10:539600-540950 (orc1-bah-delta/wt peak ratio: 0.72)

Studies that measured the replication time of this origin

Raghuraman et al. (2001): Chr10:538263 (Trep: 17.3 min.) (Confidence: 9)

Yabuki et al. (2002): Chr10:538433 (Trep: 21.1 min.)

Alvino et al. (2007): Chr10:538560 (Peak first observed at 10.0 min.)

Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr10:541000 (Activity detected in: wild-type, rad53)

Crabbé et al. (2010): Chr10:540239-540474 (Activity detected in: wild-type, rad9, rev3 rad30, eco1, ctf4, ddc1, rad24, pol2-12, elg1, tof1, mrc1-AQ, mrc1-AQ rad9, ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)

Studies that predicted the location of this origin

This origin has not been predicted by any curated study.

ARS at X-540 has unique ID: 351

Studies that confirmed an essential ACS element

Xu et al. (2006):

T

A

C

A

T

A

Studies that predicted an essential ACS element

Nieduszynski et al. (2006):

A

T

A

C

A

T

A

G

T

Eaton et al. (2010):

A

T

A

C

A

T

A

G

T

A

T

A

T

C

T

A

T

A

C

A

T

A

T

ACS LOGO:

ARS at X-540 has unique ID: 351

Alignments from the UCSC genome browser

Predicted ACS

S. cerevisiae

T

A

T

G

T

A

T

C

A

T

G

C

A

G

C

G

T

A

T

A

C

A

T

A

G

T

A

T

A

T

C

T

A

T

A

C

A

T

A

T

A

C

A

S. kudriavzevii

T

C

A

T

C

A

C

A

T

G

T

C

G

T

A

T

G

T

A

T

A

T

A

T

A

T

A

G

T

A

T

G

T

G

T

A

T

A

T

G

A

G

S. paradoxus

-

G

T

A

C

T

G

T

G

C

A

G

C

A

T

A

T

A

T

A

C

A

T

A

G

T

A

T

A

T

A

T

A

T

A

C

T

A

T

A

C

A

:

*

:

*

:

*

:

*

:

*

:

*

:

*

:

*

:

*

:

*

:

*

:

*

:

*

:

ARS at X-540 has unique ID: 351

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at X-540 has unique ID: 351

Genome-wide studies that identified this origin

Raghuraman et al. (2001): PubMed | Science

Wyrick et al. (2001): PubMed | Science

Yabuki et al. (2002): PubMed

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Alvino et al. (2007): PubMed | PubMed Central | Mol. Cell. Biol.

Shor et al. (2009): PubMed | PubMed Central | PLoS Genet.

Szilard et al. (2010): PubMed | PubMed Central | Nat. Struct. Mol. Biol.

Müller et al. (2010): PubMed | PubMed Central | Genes Dev.

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.

Studies that cloned this origin

Nieduszynski et al. (2006): PubMed | PubMed Central | Genes Dev.

Studies that analyzed this origin by 2D gel

None identified.

Studies that confirmed an essential ACS element

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Studies that predicted an essential ACS element

Nieduszynski et al. (2006): PubMed | PubMed Central | Genes Dev.

Eaton et al. (2010): PubMed | PubMed Central | Genes Dev.

ARS at X-540 has unique ID: 351

Confirmed ARS at X-540

ARS1018

Other names: proARS1018

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Studies that cloned this origin

Studies that analyzed this origin by 2D gel

Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Studies that measured the replication time of this origin

Studies that measured the activity of this origin in hydroxyurea (HU)

Studies that predicted the location of this origin

Studies that confirmed an essential ACS element

Studies that predicted an essential ACS element

Alignments from the UCSC genome browser

Genome-wide studies that identified this origin

Studies that cloned this origin

Studies that analyzed this origin by 2D gel

Studies that confirmed an essential ACS element

Studies that predicted an essential ACS element