ARS407

Status: Confirmed ARS: Confirmed by ARS assay and identified by 5 genome-wide studies.

Genomic Location: Chr4:137445-137808
Within tandem intergenic space between YDL180W and YDL179W.
• View at UCSC genome browser
• View on SGD Chromosome Features Map
• View at SGD gbrowser site
• View at Ensembl browser

DNA Sequence: View sequence

Origin Sequence Elements: No elements have been reported for this origin.

Helical Stability: Minimum -147.0 ΔG° (kcal/mol) at location 137795.

Time of Origin Replication (Trep): This site was not identified as an origin by any curated timing study (Raghuraman et al. (2001); Yabuki et al. (2002); Alvino et al. (2007)), suggesting that this site is not chromosomally active for replication initiation.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at IV-138 has unique ID: 98

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ARS at IV-138 has unique ID: 98

Studies that cloned this origin

Müller & Nieduszynski (2012): Chr4:137445-137808

Studies that analyzed this origin by 2D gel

None curated.

Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Wyrick et al. (2001): Chr4:137540-138292

Xu et al. (2006): Chr4:137005-138435

Shor et al. (2009): Chr4:136700-137700 (orc2-1/wt peak ratio: 0.48)

Szilard et al. (2010): Chr4:137775-137785

Studies that measured the replication time of this origin

The replication time of origin has not be reported by any curated study.

Studies that measured the activity of this origin in hydroxyurea (HU)

Crabbé et al. (2010): Chr4:137003-138437 (Activity detected in: elg1, tof1, mrc1-AQ, mrc1-AQ rad9, ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)

Studies that predicted the location of this origin

This origin has not been predicted by any curated study.

ARS at IV-138 has unique ID: 98

Studies that confirmed an essential ACS element

None curated.

Studies that predicted an essential ACS element

None curated.

ACS LOGO:

ARS at IV-138 has unique ID: 98

Alignments from the UCSC genome browser

ARS at IV-138 has unique ID: 98

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at IV-138 has unique ID: 98

Genome-wide studies that identified this origin

Wyrick et al. (2001): PubMed | Science

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Shor et al. (2009): PubMed | PubMed Central | PLoS Genet.

Szilard et al. (2010): PubMed | PubMed Central | Nat. Struct. Mol. Biol.

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.

Studies that cloned this origin

Müller & Nieduszynski (2012): PubMed | Genome Res.

Studies that analyzed this origin by 2D gel

None identified.

Studies that confirmed an essential ACS element

None identified.

Studies that predicted an essential ACS element

None identified.

ARS at IV-138 has unique ID: 98