Confirmed ARS at XIV-196

ARS1412

Other names: proARS1412

Status: Confirmed ARS: Confirmed by ARS assay and 2D gel and identified by 10 genome-wide studies.

Genomic Location: Chr14:196055-196291
Within convergent intergenic space between YNL242W and YNL241C.
View at UCSC genome browser
View on SGD Chromosome Features Map
View at SGD gbrowser site
View at Ensembl browser

DNA Sequence:

Origin Sequence Elements: ACS predicted.

Helical Stability: Minimum -147.6 ΔG° (kcal/mol) at location 196275.

Time of Origin Replication (Trep): Raghuraman et al. (2001) — Trep: 29.6 min.
Yabuki et al. (2002) — Trep: 30.1 min.
Alvino et al. (2007) — Peak first observed at 17.5 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at XIV-196 has unique ID: ARS1412

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ARS at XIV-196 has unique ID: ARS1412

Studies that cloned this origin

Nieduszynski et al. (2006): Chr14:196055-196291


Studies that analyzed this origin by 2D gel

Friedman et al. (1996): Chr14:194901-197536


Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Wyrick et al. (2001): Chr14:196101-196425

Xu et al. (2006): Chr14:195295-197295

Shor et al. (2009): Chr14:195500-197800 (orc2-1/wt peak ratio: 0.68)

Szilard et al. (2010): Chr14:196145-196155

Müller et al. (2010): Chr14:195725-196925 (orc1-bah-delta/wt peak ratio: 0.58)


Studies that measured the replication time of this origin

Raghuraman et al. (2001): Chr14:201788 (Trep: 29.6 min.) (Confidence: 9)

Yabuki et al. (2002): Chr14:198969 (Trep: 30.1 min.)

Alvino et al. (2007): Chr14:194500 (Peak first observed at 17.5 min.)


Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr14:196000 (Activity detected in: rad53)

Crabbé et al. (2010): Chr14:196055-196291 (Activity detected in: tof1, mrc1-AQ rad9, ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)


Studies that predicted the location of this origin

This origin has not been predicted by any curated study.



ARS at XIV-196 has unique ID: ARS1412

Studies that confirmed an essential ACS element

None curated.


Studies that predicted an essential ACS element

  Nieduszynski et al. (2006):       TTTTTAACTTTTAGCC                   
  Xu et al. (2006):      TTTTTTAACTTTTAGCCGCGGTCAGTGACATTTT  
  Eaton et al. (2010):      TTTTTTAACTTTTAGCCGCGGTCAGTGACATTT   
ACS LOGO:   ACS_logo  

ARS at XIV-196 has unique ID: ARS1412

Alignments from the UCSC genome browser

Predicted ACS
*

ARS at XIV-196 has unique ID: ARS1412

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at XIV-196 has unique ID: ARS1412

Genome-wide studies that identified this origin

Raghuraman et al. (2001): PubMed | Science

Wyrick et al. (2001): PubMed | Science

Yabuki et al. (2002): PubMed

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Alvino et al. (2007): PubMed | PubMed Central | Mol. Cell. Biol.

Shor et al. (2009): PubMed | PubMed Central | PLoS Genet.

Szilard et al. (2010): PubMed | PubMed Central | Nat. Struct. Mol. Biol.

Müller et al. (2010): PubMed | PubMed Central | Genes Dev.

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.


Studies that cloned this origin

Nieduszynski et al. (2006): PubMed | PubMed Central | Genes Dev.


Studies that analyzed this origin by 2D gel

Friedman et al. (1996): PubMed


Studies that confirmed an essential ACS element

None identified.


Studies that predicted an essential ACS element

Nieduszynski et al. (2006): PubMed | PubMed Central | Genes Dev.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Eaton et al. (2010): PubMed | PubMed Central | Genes Dev.


ARS at XIV-196 has unique ID: ARS1412