Confirmed ARS at VI-254

ARS608.5

Status: Confirmed ARS: Confirmed by ARS assay and 2D gel and identified by 3 genome-wide studies.

Genomic Location: Chr6:253316-253800
Within convergent intergenic space between YFR052W and YFR053C.
View at UCSC genome browser
View on SGD Chromosome Features Map
View at SGD gbrowser site
View at Ensembl browser

DNA Sequence:

Origin Sequence Elements: No elements have been reported for this origin.

Helical Stability: Minimum -157.9 ΔG° (kcal/mol) at location 253736.

Time of Origin Replication (Trep): Yabuki et al. (2002) — Trep: 31.8 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at VI-254 has unique ID: 683

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ARS at VI-254 has unique ID: 683

Studies that cloned this origin

Xu et al. (2006): Chr6:253316-253800


Studies that analyzed this origin by 2D gel

Yamashita et al. (1997): Chr6:253670-259874


Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Xu et al. (2006): Chr6:252995-254155


Studies that measured the replication time of this origin

Yabuki et al. (2002): Chr6:257363 (Trep: 31.8 min.)


Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr6:257000 (Activity detected in: rad53)


Studies that predicted the location of this origin

This origin has not been predicted by any curated study.



ARS at VI-254 has unique ID: 683

Studies that confirmed an essential ACS element

None curated.


Studies that predicted an essential ACS element

None curated.

ACS LOGO:   ACS_logo  


ARS at VI-254 has unique ID: 683

Alignments from the UCSC genome browser

No phylogenetic sequence conservation data.

ARS at VI-254 has unique ID: 683

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at VI-254 has unique ID: 683

Genome-wide studies that identified this origin

Yabuki et al. (2002): PubMed

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics


Studies that cloned this origin

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics


Studies that analyzed this origin by 2D gel

Yamashita et al. (1997): PubMed


Studies that confirmed an essential ACS element

None identified.


Studies that predicted an essential ACS element

None identified.


ARS at VI-254 has unique ID: 683