Confirmed ARS at VI-254

ARS608.5

Status: Confirmed ARS: Confirmed by ARS assay and 2D gel and identified by 3 genome-wide studies.

Genomic Location: Chr6:253316-253800
Within convergent intergenic space between YFR052W and YFR053C.
• View at UCSC genome browser
• View on SGD Chromosome Features Map
• View at SGD gbrowser site
• View at Ensembl browser

DNA Sequence:

Origin Sequence Elements: No elements have been reported for this origin.

Helical Stability: Minimum -157.9 ΔG° (kcal/mol) at location 253736.

Time of Origin Replication (Trep): Yabuki et al. (2002) — Trep: 31.8 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at VI-254 has unique ID: 683

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ARS at VI-254 has unique ID: 683

Studies that cloned this origin

Xu et al. (2006): Chr6:253316-253800


Studies that analyzed this origin by 2D gel

Yamashita et al. (1997): Chr6:253670-259874


Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Xu et al. (2006): Chr6:252995-254155


Studies that measured the replication time of this origin

Yabuki et al. (2002): Chr6:257363 (Trep: 31.8 min.)


Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr6:257000 (Activity detected in: rad53)


Studies that predicted the location of this origin

This origin has not been predicted by any curated study.



ARS at VI-254 has unique ID: 683

Studies that confirmed an essential ACS element

None curated.


Studies that predicted an essential ACS element

None curated.

ACS LOGO:   ACS_logo  


ARS at VI-254 has unique ID: 683

Alignments from the UCSC genome browser

No phylogenetic sequence conservation data.

ARS at VI-254 has unique ID: 683

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at VI-254 has unique ID: 683

Genome-wide studies that identified this origin

Yabuki et al. (2002): PubMed

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics


Studies that cloned this origin

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics


Studies that analyzed this origin by 2D gel

Yamashita et al. (1997): PubMed


Studies that confirmed an essential ACS element

None identified.


Studies that predicted an essential ACS element

None identified.


ARS at VI-254 has unique ID: 683