Confirmed ARS at I-42

ARS105

Other names: proARS105

Status: Confirmed ARS: Confirmed by ARS assay and identified by 9 genome-wide studies.

Genomic Location: Chr1:40716-43300
Resolution insufficient to assign intergenic space.
View at UCSC genome browser
View on SGD Chromosome Features Map
View at SGD gbrowser site
View at Ensembl browser

DNA Sequence:

Origin Sequence Elements: ACS predicted.

Helical Stability: Minimum -168.4 ΔG° (kcal/mol) at location 41106.

Time of Origin Replication (Trep): Raghuraman et al. (2001) — Trep: 34.1 min.
Alvino et al. (2007) — Peak first observed at 17.5 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at I-42 has unique ID: ARS105

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ARS at I-42 has unique ID: ARS105

Studies that cloned this origin

Xu et al. (2006): Chr1:40716-43300

Müller & Nieduszynski (2012): Chr1:41795-42274


Studies that analyzed this origin by 2D gel

None curated.


Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Wyrick et al. (2001): Chr1:41808-42182

Xu et al. (2006): Chr1:40716-43300

Shor et al. (2009): Chr1:41100-42800 (orc2-1/wt peak ratio: 0.88)

Szilard et al. (2010): Chr1:42185-42195

Müller et al. (2010): Chr1:41225-42950 (orc1-bah-delta/wt peak ratio: 0.63)


Studies that measured the replication time of this origin

Raghuraman et al. (2001): Chr1:48283 (Trep: 34.1 min.) (Confidence: 5)

Alvino et al. (2007): Chr1:39750 (Peak first observed at 17.5 min.)


Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr1:43000 (Activity detected in: rad53)

Crabbé et al. (2010): Chr1:41806-42306 (Activity detected in: eco1, elg1, tof1, mrc1-AQ, mrc1-AQ rad9, ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)


Studies that predicted the location of this origin

This origin has not been predicted by any curated study.



ARS at I-42 has unique ID: ARS105

Studies that confirmed an essential ACS element

None curated.


Studies that predicted an essential ACS element

  Xu et al. (2006):      TATATTTTATTTTTTTTTTTTCGATTAATTGAAT  
  Eaton et al. (2010):      AAAATTAACAATTAGGTTCATAGTCCCCTAATT   
ACS LOGO:   ACS_logo  

ARS at I-42 has unique ID: ARS105

Alignments from the UCSC genome browser

No phylogenetic sequence conservation data.

ARS at I-42 has unique ID: ARS105

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at I-42 has unique ID: ARS105

Genome-wide studies that identified this origin

Raghuraman et al. (2001): PubMed | Science

Wyrick et al. (2001): PubMed | Science

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Alvino et al. (2007): PubMed | PubMed Central | Mol. Cell. Biol.

Shor et al. (2009): PubMed | PubMed Central | PLoS Genet.

Szilard et al. (2010): PubMed | PubMed Central | Nat. Struct. Mol. Biol.

Müller et al. (2010): PubMed | PubMed Central | Genes Dev.

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.


Studies that cloned this origin

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Müller & Nieduszynski (2012): PubMed | Genome Res.


Studies that analyzed this origin by 2D gel

None identified.


Studies that confirmed an essential ACS element

None identified.


Studies that predicted an essential ACS element

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Eaton et al. (2010): PubMed | PubMed Central | Genes Dev.


ARS at I-42 has unique ID: ARS105