Confirmed ARS at IV-101

ARS405.5

Status: Confirmed ARS: Confirmed by ARS assay and identified by 2 genome-wide studies.

Genomic Location: Chr4:100380-101355
Resolution insufficient to assign intergenic space.
• View at UCSC genome browser
• View on SGD Chromosome Features Map
• View at SGD gbrowser site
• View at Ensembl browser

DNA Sequence:

Origin Sequence Elements: ACS predicted.

Helical Stability: Minimum -159.6 ΔG° (kcal/mol) at location 100630.

Time of Origin Replication (Trep): This site was not identified as an origin by any curated timing study (Raghuraman et al. (2001); Yabuki et al. (2002); Alvino et al. (2007)), suggesting that this site is not chromosomally active for replication initiation.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at IV-101 has unique ID: 668

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ARS at IV-101 has unique ID: 668

Studies that cloned this origin

Xu et al. (2006): Chr4:100380-101355


Studies that analyzed this origin by 2D gel

None curated.


Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Xu et al. (2006): Chr4:100375-101355


Studies that measured the replication time of this origin

The replication time of origin has not be reported by any curated study.


Studies that measured the activity of this origin in hydroxyurea (HU)

Crabbé et al. (2010): Chr4:100380-101355 (Activity detected in: mrc1, ctf18 rad9, mec1-100, rad53)


Studies that predicted the location of this origin

This origin has not been predicted by any curated study.



ARS at IV-101 has unique ID: 668

Studies that confirmed an essential ACS element

None curated.


Studies that predicted an essential ACS element

  Xu et al. (2006):      AGTATAAATGTTTAGTTTTATCCTACATACATAT  
ACS LOGO:   ACS_logo  

ARS at IV-101 has unique ID: 668

Alignments from the UCSC genome browser

No phylogenetic sequence conservation data.

ARS at IV-101 has unique ID: 668

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at IV-101 has unique ID: 668

Genome-wide studies that identified this origin

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.


Studies that cloned this origin

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics


Studies that analyzed this origin by 2D gel

None identified.


Studies that confirmed an essential ACS element

None identified.


Studies that predicted an essential ACS element

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics


ARS at IV-101 has unique ID: 668