ARS1319

Status: Confirmed ARS: Confirmed by ARS assay and identified by 10 genome-wide studies.

Genomic Location: Chr13:503346-504087
Within divergent intergenic space between YMR118C and TL(CAA)M.
• View at UCSC genome browser
• View on SGD Chromosome Features Map
• View at SGD gbrowser site
• View at Ensembl browser

DNA Sequence: View sequence

Origin Sequence Elements: ACS predicted.

Helical Stability: Minimum -145.5 ΔG° (kcal/mol) at location 503846.

Time of Origin Replication (Trep): Raghuraman et al. (2001) — Trep: 18.8 min.
Yabuki et al. (2002) — Trep: 26.7 min.
Alvino et al. (2007) — Peak first observed at 10.0 min.

Origin activity in HU: Origin activity detected in HU — more details.

ARS at XIII-504 has unique ID: 475

DetailedDefaultZoomed Out

Loading - Please wait...

ARS at XIII-504 has unique ID: 475

Studies that cloned this origin

Liachko et al. (2010): Chr13:503346-504087

Studies that analyzed this origin by 2D gel

None curated.

Studies that detected this origin by chromatin immunoprecipitation (ChIP)

Wyrick et al. (2001): Chr13:503388-503770

Xu et al. (2006): Chr13:502235-504195

Shor et al. (2009): Chr13:502800-504200 (orc2-1/wt peak ratio: 0.57)

Szilard et al. (2010): Chr13:503575-503585

Müller et al. (2010): Chr13:502550-504050 (orc1-bah-delta/wt peak ratio: 0.75)

Studies that measured the replication time of this origin

Raghuraman et al. (2001): Chr13:504318 (Trep: 18.8 min.) (Confidence: 9)

Yabuki et al. (2002): Chr13:503074 (Trep: 26.7 min.)

Alvino et al. (2007): Chr13:502890 (Peak first observed at 10.0 min.)

Studies that measured the activity of this origin in hydroxyurea (HU)

Feng et al. (2006): Chr13:504333 (Activity detected in: rad53)

Crabbé et al. (2010): Chr13:502634-503134 (Activity detected in: ddc1, pol2-12, mrc1-AQ, mrc1-AQ rad9, ctf8, ctf18, mrc1, dcc1, ctf18 rad9, mec1-100, rad53, mec1)

Studies that predicted the location of this origin

This origin has not been predicted by any curated study.

ARS at XIII-504 has unique ID: 475

Studies that confirmed an essential ACS element

None curated.

Studies that predicted an essential ACS element

Eaton et al. (2010):

A

G

A

T

T

T

T

A

C

C

T

T

T

T

G

G

C

A

A

A

A

A

A

T

C

A

G

C

A

C

A

T

T

ACS LOGO:

ARS at XIII-504 has unique ID: 475

Alignments from the UCSC genome browser

ARS at XIII-504 has unique ID: 475

These notes are manually curated. To submit notes for this replication origin site please contact us.

There are no notes entered for this replication origin site.

ARS at XIII-504 has unique ID: 475

Genome-wide studies that identified this origin

Raghuraman et al. (2001): PubMed | Science

Wyrick et al. (2001): PubMed | Science

Yabuki et al. (2002): PubMed

Feng et al. (2006): PubMed | PubMed Central | Nat. Cell Biol.

Xu et al. (2006): PubMed | PubMed Central | BMC Genomics

Alvino et al. (2007): PubMed | PubMed Central | Mol. Cell. Biol.

Shor et al. (2009): PubMed | PubMed Central | PLoS Genet.

Szilard et al. (2010): PubMed | PubMed Central | Nat. Struct. Mol. Biol.

Müller et al. (2010): PubMed | PubMed Central | Genes Dev.

Crabbé et al. (2010): PubMed | Nat. Struct. Mol. Biol.

Studies that cloned this origin

Liachko et al. (2010): PubMed | PubMed Central | PLoS Genet.

Studies that analyzed this origin by 2D gel

None identified.

Studies that confirmed an essential ACS element

None identified.

Studies that predicted an essential ACS element

Eaton et al. (2010): PubMed | PubMed Central | Genes Dev.

ARS at XIII-504 has unique ID: 475